Modifying microbial cells to overproduce bioproducts of interest is a challenging design task, requiring in-depth knowledge of cell physiology and rational inference of design strategies that could improve production while maintaining cellular homeostasis. This work investigates the design of growth-coupled cell strains that could couple production with growth, a widely used approach for strain design. We first propose this type of design as a multi-objective optimisation problem through mathematical modelling. Then, we introduce an improved nondominated sorting genetic algorithm to tackle optimisation challenges inherent in such a design task and identify high-quality design strategies. Our case studies demonstrate the promise of the proposed approach in designing high-production strains in the field of biomanufacturing.

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Evolutionary Multi-objective Design of Growth-Coupled Microbial Cell Factories

  • Shouyong Jiang,
  • Wenbo Shan,
  • Xiongyan Yang,
  • Chunchao Yang,
  • Jichun Li

摘要

Modifying microbial cells to overproduce bioproducts of interest is a challenging design task, requiring in-depth knowledge of cell physiology and rational inference of design strategies that could improve production while maintaining cellular homeostasis. This work investigates the design of growth-coupled cell strains that could couple production with growth, a widely used approach for strain design. We first propose this type of design as a multi-objective optimisation problem through mathematical modelling. Then, we introduce an improved nondominated sorting genetic algorithm to tackle optimisation challenges inherent in such a design task and identify high-quality design strategies. Our case studies demonstrate the promise of the proposed approach in designing high-production strains in the field of biomanufacturing.