Designing an intelligent system for monitoring environmental metrics requires the system to be integrating different technologies and applications. One of the aspects includes the development of software and hardware solutions for visualization and analysis of data from environmental monitoring systems. In additional, monitoring schemes for biodiversity based on input data underlines the importance of developing indicators based on scientific data and perspectives of the approach to achieve effectiveness and performance of monitoring programs. Also, realization of adaptive semantic models in intelligent information systems responds to the difficulties connected with the management and application of geochemical and ecological data for effective systems of observation and tracking. By Combining these approaches, a integrated and intelligent environmental monitoring system that expands the monitoring opportunities is developed. The research paper included the metrics and parameters that affect the biogeocenosis, determined the hardware to design the monitoring system, and offered a software realization of the system.