Next-generation sequencing (NGS) and electronic nose (eNose) technologies are transformative tools that have significantly advanced the fields of apiculture and honey analysis. These sophisticated methods offer profound insights into honey authenticity, quality control processes, and bee population health diagnostics, thereby enhancing the scientific understanding and commercial integrity of honey production. Nowadays, techniques are developing more and more rapidly and provide new possibilities for detecting the authenticity of honey or its geographical origin. In this review paper, a Web of Knowledge was used to create two queries, i.e., 1. “NGS,” ‘next-generation sequencing,” and “honey,” and 2. “eNose,” “electronic nose,” and “honey.” In the first case, 33 articles were found, and in the second, 97.