Scholarlink

Background <p>TogoID (<a href="https://togoid.dbcls.jp/">https://togoid.dbcls.jp/</a>) is an identifier (ID) conversion service designed to link IDs across diverse categories of life science databases. With its ability to obtain IDs related in different semantic relationships, a user-friendly web interface, and a regular automatic data update system, TogoID has been a valuable tool for bioinformatics.</p> Results <p>We have recently expanded TogoID's ability to represent semantics between datasets, enabling it to handle multiple semantic relationships within dataset pairs. This enhancement enables TogoID to distinguish relationships such as "glycans bind to proteins" or "glycans are processed by proteins" between glycans and proteins. Additional new features include the ability to display labels corresponding to database IDs, making it easier to interpret the relationships between the various IDs available in TogoID, and the ability to convert labels to IDs, extending the entry point for ID conversion. The implementation of URL parameters, which reproduces the state of TogoID's web application, allows users to share complex search results through a simple URL.</p> Conclusions <p>These advancements improve TogoID’s utility in bioinformatics, allowing researchers to explore complex ID relationships. By introducing the tool’s multi-semantic and label features, TogoID expands the concept of ID conversion and supports more comprehensive and efficient data integration across life science databases.</p>

错误：搜索内容不能为空，请输入英文关键词
错误：关键词超出字数限制，请精简
高级检索

Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2025年1月8日

查看全文
  • Shuya Ikeda,
  • Kiyoko F. Aoki-Kinoshita,
  • Hirokazu Chiba,
  • Susumu Goto,
  • Masae Hosoda,
  • Shuichi Kawashima,
  • Jin-Dong Kim,
  • Yuki Moriya,
  • Tazro Ohta,
  • Hiromasa Ono,
  • Terue Takatsuki,
  • Yasunori Yamamoto,
  • Toshiaki Katayama

摘要

Background

TogoID (https://togoid.dbcls.jp/) is an identifier (ID) conversion service designed to link IDs across diverse categories of life science databases. With its ability to obtain IDs related in different semantic relationships, a user-friendly web interface, and a regular automatic data update system, TogoID has been a valuable tool for bioinformatics.

Results

We have recently expanded TogoID's ability to represent semantics between datasets, enabling it to handle multiple semantic relationships within dataset pairs. This enhancement enables TogoID to distinguish relationships such as "glycans bind to proteins" or "glycans are processed by proteins" between glycans and proteins. Additional new features include the ability to display labels corresponding to database IDs, making it easier to interpret the relationships between the various IDs available in TogoID, and the ability to convert labels to IDs, extending the entry point for ID conversion. The implementation of URL parameters, which reproduces the state of TogoID's web application, allows users to share complex search results through a simple URL.

Conclusions

These advancements improve TogoID’s utility in bioinformatics, allowing researchers to explore complex ID relationships. By introducing the tool’s multi-semantic and label features, TogoID expands the concept of ID conversion and supports more comprehensive and efficient data integration across life science databases.