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Background <p>Microbiome-wide association studies showed links between colorectal cancer (CRC) and gut microbiota. However, the clinical application of gut microbiota in CRC prevention has been hindered by the diversity of study populations and technical variations. We aimed to determine CRC-related gut microbial signatures based on cross-regional, cross-population, and cross-cohort metagenomic datasets, and elucidate its application value in CRC risk assessment.</p> Methods <p>We used the MMUPHin tool to perform a meta-analysis of our own cohort and seven publicly available metagenomics datasets to identify gut microbial species associated with CRC across different cohorts, comprising of 570 CRC cases and 557 controls. Based on differential species sets, we constructed the microbial risk score (MRS) using α-diversity of the sub-community (MRS<sub>α</sub>), weighted/unweighted summation methods and machine learning algorithms. Cohort-to-cohort training and validation were performed to demonstrate the transferability.</p> Results <p>We found that MRS<sub>α</sub> of core species was better validated and more interpretable than those constructed with summation methods or machine learning algorithms. Six species, including <i>Parvimonas micra</i>, <i>Clostridium symbiosum</i>, <i>Peptostreptococcus stomatis</i>, <i>Bacteroides fragilis</i>, <i>Gemella morbillorum</i>, and <i>Fusobacterium nucleatum</i>, were included in MRS<sub>α</sub> constructed by half or more of the cohorts. The AUC of MRS<sub>α</sub>, calculated based on the sub-community of six species, varied between 0.619 and 0.824 across the eight cohorts.</p> Conclusion <p>We identified six CRC-related species across regions, populations, and cohorts. The constructed MRS<sub>α</sub> could contribute to the risk prediction of CRC in different populations.</p>

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Cross-cohort analysis identifies shared gut microbial signatures and validates microbial risk scores for colorectal cancer

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2025年6月17日

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  • Yuhan Zhang,
  • Jiahui Luo,
  • Kuangyu Chen,
  • Na Li,
  • Chenyu Luo,
  • Shuang Di,
  • Junjie Qin,
  • Feng Zhang,
  • Hongda Chen,
  • Min Dai

摘要

Background

Microbiome-wide association studies showed links between colorectal cancer (CRC) and gut microbiota. However, the clinical application of gut microbiota in CRC prevention has been hindered by the diversity of study populations and technical variations. We aimed to determine CRC-related gut microbial signatures based on cross-regional, cross-population, and cross-cohort metagenomic datasets, and elucidate its application value in CRC risk assessment.

Methods

We used the MMUPHin tool to perform a meta-analysis of our own cohort and seven publicly available metagenomics datasets to identify gut microbial species associated with CRC across different cohorts, comprising of 570 CRC cases and 557 controls. Based on differential species sets, we constructed the microbial risk score (MRS) using α-diversity of the sub-community (MRSα), weighted/unweighted summation methods and machine learning algorithms. Cohort-to-cohort training and validation were performed to demonstrate the transferability.

Results

We found that MRSα of core species was better validated and more interpretable than those constructed with summation methods or machine learning algorithms. Six species, including Parvimonas micra, Clostridium symbiosum, Peptostreptococcus stomatis, Bacteroides fragilis, Gemella morbillorum, and Fusobacterium nucleatum, were included in MRSα constructed by half or more of the cohorts. The AUC of MRSα, calculated based on the sub-community of six species, varied between 0.619 and 0.824 across the eight cohorts.

Conclusion

We identified six CRC-related species across regions, populations, and cohorts. The constructed MRSα could contribute to the risk prediction of CRC in different populations.