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<p>A fundamental feature of the antibody structure is the flexible linker between the 3 fragments that allows great flexibility and simultaneous binding to epitopes of antigens and receptors. Combining dynamic light scattering, neutron spin-echo spectroscopy and PFG-NMR we determine characteristic internal fragment dynamics on top of translational and rotational diffusion under crowding conditions. Short-time and long-time translational diffusion show an effective hard sphere like behavior within a colloidal picture. Internal fragment motions are characterized as “attack” and “search” motions complemented by rotational fragment motions. We find that the “attack” motions exposing the binding domain are highly preserved from low to physiologically relevant concentrations and higher, while “search” motions and overall rotational diffusion are suppressed under crowding conditions. Hydrodynamic interactions change the friction between fragments determining relaxation times while interparticle interactions influence the strength of the entropic spring between fragments. The strategic redesign of the linker region to facilitate “attack” motions and fragment rotation has the potential to enhance the therapeutic efficacy of mAbs.</p><p></p>

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Diffusion, search and attack motions of antibodies

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2025年10月13日

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  • Ralf Biehl,
  • Margarita Kruteva,
  • Orsolya Czakkel,
  • Ingo Hoffmann,
  • Dieter Richter,
  • Andreas M. Stadler

摘要

A fundamental feature of the antibody structure is the flexible linker between the 3 fragments that allows great flexibility and simultaneous binding to epitopes of antigens and receptors. Combining dynamic light scattering, neutron spin-echo spectroscopy and PFG-NMR we determine characteristic internal fragment dynamics on top of translational and rotational diffusion under crowding conditions. Short-time and long-time translational diffusion show an effective hard sphere like behavior within a colloidal picture. Internal fragment motions are characterized as “attack” and “search” motions complemented by rotational fragment motions. We find that the “attack” motions exposing the binding domain are highly preserved from low to physiologically relevant concentrations and higher, while “search” motions and overall rotational diffusion are suppressed under crowding conditions. Hydrodynamic interactions change the friction between fragments determining relaxation times while interparticle interactions influence the strength of the entropic spring between fragments. The strategic redesign of the linker region to facilitate “attack” motions and fragment rotation has the potential to enhance the therapeutic efficacy of mAbs.