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<p><i>Trametes sanguinea</i> belongs to the polyporaceae family and its fruiting body possesses several benefits. In the current study, <i>Trametes sanguinea</i> ZHSJ (<i>T. sanguinea</i> ZHSJ) isolated from the chestnut tree wood was studied for its whole genome sequence and transcriptome sequence with their annotations. <i>T. sanguinea</i> ZHSJ genome is 41.3243 Mb in length with a total of 135 contigs with N50 contig length 2.8138 Mb. A total of 10886 genes of <i>T. sanguinea</i> ZHSJ were annotated. Further, RNA sequencing and assembly represented 11861 genes, out of these 10,507 genes were annotated with four annotation databases. Moreover, denovo prediction annotation performed by Funannotate represented 12,268 coding genes and simple sequence repeats (SSR) prediction represented total 1,242 SSR and among them 707 were trinucleotide repeat motifs.</p>

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Whole genome sequencing and annotations of Trametes sanguinea ZHSJ

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2025年8月21日

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  • Rathna Silviya Lodi,
  • Xiuwen Jia,
  • Peng Yang,
  • Chune Peng,
  • Xiaodan Dong,
  • Jiandong Han,
  • Xiaofei Liu,
  • Luzhang Wan,
  • Lizeng Peng

摘要

Trametes sanguinea belongs to the polyporaceae family and its fruiting body possesses several benefits. In the current study, Trametes sanguinea ZHSJ (T. sanguinea ZHSJ) isolated from the chestnut tree wood was studied for its whole genome sequence and transcriptome sequence with their annotations. T. sanguinea ZHSJ genome is 41.3243 Mb in length with a total of 135 contigs with N50 contig length 2.8138 Mb. A total of 10886 genes of T. sanguinea ZHSJ were annotated. Further, RNA sequencing and assembly represented 11861 genes, out of these 10,507 genes were annotated with four annotation databases. Moreover, denovo prediction annotation performed by Funannotate represented 12,268 coding genes and simple sequence repeats (SSR) prediction represented total 1,242 SSR and among them 707 were trinucleotide repeat motifs.