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<p>Neuroimaging has entered the era of big data. However, the advancement of preprocessing pipelines falls behind the rapid expansion of data volume, causing substantial computational challenges. Here we present DeepPrep, a pipeline empowered by deep learning and a workflow manager. Evaluated on over 55,000 scans, DeepPrep demonstrates tenfold acceleration, scalability and robustness compared to the state-of-the-art pipeline, thereby meeting the scalability requirements of neuroimaging.</p>

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DeepPrep: an accelerated, scalable and robust pipeline for neuroimaging preprocessing empowered by deep learning

  • 期刊论文

  • 出版模式：

    开放获取

  • 发表日期：

    2025年2月6日

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  • Jianxun Ren,
  • Ning An,
  • Cong Lin,
  • Youjia Zhang,
  • Zhenyu Sun,
  • Wei Zhang,
  • Shiyi Li,
  • Ning Guo,
  • Weigang Cui,
  • Qingyu Hu,
  • Weiwei Wang,
  • Xuehai Wu,
  • Yinyan Wang,
  • Tao Jiang,
  • Theodore D. Satterthwaite,
  • Danhong Wang,
  • Hesheng Liu

摘要

Neuroimaging has entered the era of big data. However, the advancement of preprocessing pipelines falls behind the rapid expansion of data volume, causing substantial computational challenges. Here we present DeepPrep, a pipeline empowered by deep learning and a workflow manager. Evaluated on over 55,000 scans, DeepPrep demonstrates tenfold acceleration, scalability and robustness compared to the state-of-the-art pipeline, thereby meeting the scalability requirements of neuroimaging.