<p>The past decade has seen remarkable progress in identifying genes that, when impacted by deleterious coding variation, confer high likelihood for autism spectrum disorder (ASD), intellectual disability and other associated developmental disorders. However, most underlying gene discovery efforts have focused on individuals of European ancestry, limiting insights into genetic liability across diverse populations. To help address this, the Genomics of Autism in Latin American Ancestries (GALA) Consortium was formed, presenting here the largest sequencing study of autism in Latin American individuals (<i>n</i> &gt; 15,000, including 4,717 participants with an ASD diagnosis). We identified 35 genome-wide significant (false discovery rate &lt; 0.05) autism-associated genes, with substantial overlap with findings from European cohorts, and highly constrained genes showing consistent signal across populations. The results provide support for emerging (for example, <i>MARK2</i>, <i>YWHAG</i>, <i>PACS1</i>, <i>RERE</i>, <i>SPEN</i>, <i>GSE1</i>, <i>GLS</i>, <i>TNPO3</i> and <i>ANKRD17</i>) and established autism genes and for the utility of genetic testing approaches for deleterious variants in individuals from diverse backgrounds; the results also demonstrate the ongoing need for more inclusive genetic research and testing. We conclude that the biology of autism is consistent across populations, with no detectable influence of ancestry.</p>

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Deleterious coding variation associated with autism is shared across ancestries

  • Marina Natividad Avila,
  • Seulgi Jung,
  • F. Kyle Satterstrom,
  • Jack M. Fu,
  • Tess Levy,
  • Laura G. Sloofman,
  • Lambertus Klei,
  • Thariana Pichardo,
  • Dalia Marquez,
  • Christine R. Stevens,
  • Caroline M. Cusick,
  • Jennifer L. Ames,
  • Gabriele S. Campos,
  • Hilda Cerros,
  • Roberto Chaskel,
  • Claudia I. S. Costa,
  • Michael L. Cuccaro,
  • Andrea del Pilar Lopez,
  • Magdalena Fernandez,
  • Eugenio Ferro,
  • Liliana Galeano,
  • Ana Cristina D. E. S. Girardi,
  • Anthony J. Griswold,
  • Luis C. Hernandez,
  • Naila Lourenço,
  • Yunin Ludena,
  • Diana Núñez-Ríos,
  • Rosa Oyama,
  • Katherine P. Peña,
  • Isaac Pessah,
  • Rebecca Schmidt,
  • Holly M. Sweeney,
  • Lizbeth Tolentino,
  • Jaqueline Y. T. Wang,
  • Lilia Albores-Gallo,
  • Lisa A. Croen,
  • Carlos S. Cruz-Fuentes,
  • Irva Hertz-Picciotto,
  • Alexander Kolevzon,
  • Maria Claudia Lattig,
  • Liliana Mayo,
  • Maria Rita Passos-Bueno,
  • Margaret A. Pericak-Vance,
  • Paige M. Siper,
  • Flora Tassone,
  • M. Pilar Trelles,
  • Silvia De Rubeis,
  • Jennifer Foss-Feig,
  • Erina Hara,
  • Danielle Halpern,
  • Yi Li,
  • Andrea del Pilar Lopez,
  • Catherine Sancimino,
  • Renee Soufer,
  • Jessica Zweifach,
  • Branko Aleksic,
  • Mykyta Artomov,
  • Mafalda Barbosa,
  • Elisa Benetti,
  • Monica Biscaldi-Schafer,
  • Anders D. Børglum,
  • Harrison Brand,
  • Alfredo Brusco,
  • Simona Cardaropoli,
  • Diana Carli,
  • Angel Carracedo,
  • Marcus C. Y. Chan,
  • Andreas G. Chiocchetti,
  • Brian H. Y. Chung,
  • Brett Collins,
  • Ryan L. Collins,
  • Hilary Coon,
  • David J. Cutler,
  • Ryan N. Doan,
  • Enrico Domenici,
  • Shan Dong,
  • Chiara Fallerini,
  • Montserrat Fernández-Prieto,
  • Giovanni Battista Ferrero,
  • Christine M. Freitag,
  • J. Jay Gargus,
  • Sherif Gerges,
  • Elisa Giorgio,
  • Stephen Guter,
  • Emily Hansen-Kiss,
  • Gail E. Herman,
  • David M. Hougaard,
  • Christina M. Hultman,
  • Suma Jacob,
  • Miia Kaartinen,
  • Itaru Kushima,
  • So Lun Lee,
  • Terho Lehtimäki,
  • Lindsay Liang,
  • Carla Lintas,
  • Alicia Ljungdahl,
  • Caterina Lo Rizzo,
  • Patricia Maciel,
  • Nell Maltman,
  • Marianna Manara,
  • Dara S. Manoach,
  • Gal Meiri,
  • Idan Menashe,
  • Judith Miller,
  • Nancy Minshew,
  • Matthew Mosconi,
  • Rachel Nguyen,
  • Norio Ozaki,
  • Aarno Palotie,
  • Mara Parellada,
  • Lisa Pavinato,
  • Minshi Peng,
  • Margaret Pericak-Vance,
  • Antonio M. Persico,
  • Isaac N. Pessah,
  • Kaija Puura,
  • Abraham Reichenberg,
  • Alessandra Renieri,
  • Stephan J. Sanders,
  • Sven Sandin,
  • Stephen W. Scherer,
  • Sabine Schlitt,
  • Rebecca J. Schmidt,
  • Lauren Schmitt,
  • Katja Schneider-Momm,
  • Laura Sloofman,
  • Moyra Smith,
  • Pål Suren,
  • James S. Sutcliffe,
  • John A. Sweeney,
  • Karoline Teufel,
  • Elisabetta Trabetti,
  • Slavica Trajkova,
  • Brie Wamsley,
  • Lauren A. Weiss,
  • Mullin H. C. Yu,
  • Ryan Yuen,
  • Michael E. Talkowski,
  • Mark J. Daly,
  • Behrang Mahjani,
  • Silvia De Rubeis,
  • Edwin H. Cook,
  • Kathryn Roeder,
  • Catalina Betancur,
  • Bernie Devlin,
  • Joseph D. Buxbaum

摘要

The past decade has seen remarkable progress in identifying genes that, when impacted by deleterious coding variation, confer high likelihood for autism spectrum disorder (ASD), intellectual disability and other associated developmental disorders. However, most underlying gene discovery efforts have focused on individuals of European ancestry, limiting insights into genetic liability across diverse populations. To help address this, the Genomics of Autism in Latin American Ancestries (GALA) Consortium was formed, presenting here the largest sequencing study of autism in Latin American individuals (n > 15,000, including 4,717 participants with an ASD diagnosis). We identified 35 genome-wide significant (false discovery rate < 0.05) autism-associated genes, with substantial overlap with findings from European cohorts, and highly constrained genes showing consistent signal across populations. The results provide support for emerging (for example, MARK2, YWHAG, PACS1, RERE, SPEN, GSE1, GLS, TNPO3 and ANKRD17) and established autism genes and for the utility of genetic testing approaches for deleterious variants in individuals from diverse backgrounds; the results also demonstrate the ongoing need for more inclusive genetic research and testing. We conclude that the biology of autism is consistent across populations, with no detectable influence of ancestry.