<p>G-protein-coupled receptors (GPCRs) have key roles in physiology and are central targets for drug discovery and development<sup><CitationRef CitationID="CR1">1</CitationRef>,<CitationRef CitationID="CR2">2</CitationRef></sup>, but the design of protein agonists and antagonists has been challenging as GPCRs are integral membrane proteins and conformationally dynamic<sup><CitationRef AdditionalCitationIDS="CR4 CR5" CitationID="CR3">3</CitationRef>–<CitationRef CitationID="CR6">6</CitationRef></sup>. Here we describe de novo design methods and a high-throughput receptor-diversion microscopy-based screen for generating GPCR-binding miniproteins with high affinity, potency and selectivity. We design miniprotein agonists that activate receptors involved in itch and pain, as well as antagonists that inhibit receptors implicated in cancer, metabolic disorders such as diabetes and obesity, and migraines. The cryo-electron microscopy (cryo-EM) structures of five receptor-bound designs are close to the computational design models. A designed chemokine receptor antagonist mobilizes haematopoietic stem and progenitor cells in vivo at a level comparable to a clinically used drug, with fewer adverse effects.</p>

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De novo design of miniproteins targeting GPCRs

  • Edin Muratspahić,
  • David Feldman,
  • David E. Kim,
  • Xiangli Qu,
  • Ana-Maria Bratovianu,
  • Paula Rivera-Sánchez,
  • Jan Hendrik Voss,
  • Emil P. T. Hertz,
  • Mads Jeppesen,
  • Federica Dimitri,
  • Kensuke Sakamoto,
  • Amrita Nallathambi,
  • Pia Peceli,
  • Jianjun Cao,
  • Brian P. Cary,
  • Matthew J. Belousoff,
  • Peter Keov,
  • Phuc N. H. Trinh,
  • Qingchao Chen,
  • Yue Ren,
  • Justyn Fine,
  • Sudha Mishra,
  • Annu Dalal,
  • Shachie Sinha,
  • Ramanuj Banerjee,
  • Manisankar Ganguly,
  • Karthik Varappalayam Karuppusamy,
  • Isaac Sappington,
  • Thomas Schlichthaerle,
  • Jason Z. Zhang,
  • Arvind Pillai,
  • Brian Coventry,
  • Ljubica Mihaljević,
  • Magnus S. Bauer,
  • Susana Vázquez Torres,
  • Amir Motmaen,
  • Gyu Rie Lee,
  • Long Tran,
  • Xinru Wang,
  • Inna Goreshnik,
  • Dionne K. Vafeados,
  • Justin E. Svendsen,
  • Parisa Hosseinzadeh,
  • Nicolai Lindegaard,
  • Matthäus Brandt,
  • Yann Waltenspühl,
  • Kristine Deibler,
  • Lukas Deweid,
  • Anja Bennett,
  • Jendrik Schöppe,
  • Tiantang Dong,
  • Xiaoli Yan,
  • Luke Oostdyk,
  • William Cao,
  • Lakshmi Anantharaman,
  • Johan J. Weisser,
  • Jesper Frank Bastlund,
  • Christoffer Bundgaard,
  • Ayodeji A. Asuni,
  • Justin G. English,
  • Lance J. Stewart,
  • Lauren Halloran,
  • Jamie B. Spangler,
  • André Lieber,
  • Arun K. Shukla,
  • Patrick M. Sexton,
  • Bryan L. Roth,
  • Brian E. Krumm,
  • Denise Wootten,
  • Christopher G. Tate,
  • Christoffer Norn,
  • David Baker

摘要

G-protein-coupled receptors (GPCRs) have key roles in physiology and are central targets for drug discovery and development1,2, but the design of protein agonists and antagonists has been challenging as GPCRs are integral membrane proteins and conformationally dynamic36. Here we describe de novo design methods and a high-throughput receptor-diversion microscopy-based screen for generating GPCR-binding miniproteins with high affinity, potency and selectivity. We design miniprotein agonists that activate receptors involved in itch and pain, as well as antagonists that inhibit receptors implicated in cancer, metabolic disorders such as diabetes and obesity, and migraines. The cryo-electron microscopy (cryo-EM) structures of five receptor-bound designs are close to the computational design models. A designed chemokine receptor antagonist mobilizes haematopoietic stem and progenitor cells in vivo at a level comparable to a clinically used drug, with fewer adverse effects.