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<p>Plant development and stress responses are coordinated through phytohormone-mediated gene networks, yet resolving their spatiotemporal crosstalk remains challenging. Here, we generate a single-nucleus transcriptomic atlas of <i>Arabidopsis</i> seedlings, capturing early (0.5 h, 3 h) responses to 9 hormones across ~500,000 nuclei, including auxin, cytokinin, ABA, gibberellin, strigolactone, brassinosteroid, ethylene, JA, and SA. Within this window, most hormones showed rapid and cell-type-specific responses, whereas JA, SA, ABA showed more sustained and convergent responses by 3 h. Co-directional transcriptomic overlap was strongest at 0.5 h, while the JA-, SA-, and ABA-related responses showed the highest overlap at 3 h. Pathway-level analysis indicated asymmetric relationships among JA, SA, and ABA across biosynthetic and catabolic layers. Spatially, transcriptomic response overlap separated shoots from other tissues, with guard cells as shoot-side outliers showing weak JA–SA–ABA overlap. We further identified an SA-induced guard-cell-specific MYB60-centered module linked to ABA-associated stomatal regulators, suggesting a circuit that may fine-tune stomatal dynamics. Together, this atlas provides a high-resolution view of phytohormone response dynamics and interactions.</p>

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Cell-type specific early perception of nine phytohormones revealed by single-nucleus transcriptomics in Arabidopsis

  • 期刊论文

  • 出版模式：

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  • 发表日期：

    2026年7月31日

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  • Zhijian Liu,
  • Zhuowen Li,
  • Yuzhuo Wang,
  • Yanping Long,
  • Hongming Zhao,
  • Yuwei Qin,
  • Xinlong Zhu,
  • Hongwei Guo,
  • Kai Jiang,
  • Jixian Zhai

摘要

Plant development and stress responses are coordinated through phytohormone-mediated gene networks, yet resolving their spatiotemporal crosstalk remains challenging. Here, we generate a single-nucleus transcriptomic atlas of Arabidopsis seedlings, capturing early (0.5 h, 3 h) responses to 9 hormones across ~500,000 nuclei, including auxin, cytokinin, ABA, gibberellin, strigolactone, brassinosteroid, ethylene, JA, and SA. Within this window, most hormones showed rapid and cell-type-specific responses, whereas JA, SA, ABA showed more sustained and convergent responses by 3 h. Co-directional transcriptomic overlap was strongest at 0.5 h, while the JA-, SA-, and ABA-related responses showed the highest overlap at 3 h. Pathway-level analysis indicated asymmetric relationships among JA, SA, and ABA across biosynthetic and catabolic layers. Spatially, transcriptomic response overlap separated shoots from other tissues, with guard cells as shoot-side outliers showing weak JA–SA–ABA overlap. We further identified an SA-induced guard-cell-specific MYB60-centered module linked to ABA-associated stomatal regulators, suggesting a circuit that may fine-tune stomatal dynamics. Together, this atlas provides a high-resolution view of phytohormone response dynamics and interactions.