<p>We present the high-throughput automated screening techniques that are being used to develop bacteriophage-based therapeutic products currently under investigation in human clinical trials to combat urinary tract infections<sup><CitationRef CitationID="CR1">1</CitationRef></sup>. By integrating modern liquid handling robotics, standardized phenotypic assays, and computer vision-based enumeration, we established a platform capable of reproducibly screening large collections of phages against clinically derived bacterial strain panels. This approach enabled systematic assessment of phage-bacteria interactions at scale, facilitating the identification and optimization of phage cocktails with broad in vitro activity. Although bacteriophage therapy has long been investigated as a strategy for treating bacterial infections, few frameworks exist for developing phage combinations in a reproducible and scalable manner. The methods outlined here address this gap and aim to support the broader development of therapeutic assets available to combat antibiotic resistance.</p>

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High-throughput methods leveraging robotics and computer vision for the development of therapeutic phage cocktails

  • Taylor J. R. Penke,
  • Aeron Tynes Hammack,
  • Lana J. McMillan,
  • Ethan Baker,
  • Pearl Wilcock,
  • Nick Healy,
  • Morgan K. Y. Wall,
  • Naomi Chavez,
  • Iain Wright,
  • Hannah H. Tuson,
  • Sara Woessner,
  • Ashley Trama,
  • Cameron J. Prybol,
  • Eyra Dordi,
  • Ava Ghobadian,
  • David G. Ousterout,
  • Nicholas R. Conley,
  • Paul Garofolo

摘要

We present the high-throughput automated screening techniques that are being used to develop bacteriophage-based therapeutic products currently under investigation in human clinical trials to combat urinary tract infections1. By integrating modern liquid handling robotics, standardized phenotypic assays, and computer vision-based enumeration, we established a platform capable of reproducibly screening large collections of phages against clinically derived bacterial strain panels. This approach enabled systematic assessment of phage-bacteria interactions at scale, facilitating the identification and optimization of phage cocktails with broad in vitro activity. Although bacteriophage therapy has long been investigated as a strategy for treating bacterial infections, few frameworks exist for developing phage combinations in a reproducible and scalable manner. The methods outlined here address this gap and aim to support the broader development of therapeutic assets available to combat antibiotic resistance.