<p>Wind turbines in seismically active regions are increasingly vulnerable to earthquake-induced vibrations due to their growing height and flexibility. Effective vibration control is therefore essential to ensure structural safety and operational reliability. This study examines the performance of a novel compact nonlinear magnetic damper with non-contact restoring and damping force generation in mitigating the seismic response of wind turbine towers. The tower is modeled through a three-degree-of-freedom modal representation, corresponding to the first three fore–aft mode shapes obtained from a finite element–based modal analysis. A synthetic acceleration record was then developed by averaging the frequency content of five well-known earthquakes to represent their dynamic characteristics, providing a comprehensive excitation spectrum for evaluation. The damper parameters were optimized using a Bayesian optimization framework, with the root-mean-square of tower-top displacement adopted as the objective function. The optimized configuration was subsequently assessed under each individual earthquake record to evaluate its robustness. Results show that the proposed damper, together with the optimization scheme, achieves 36–65% reductions in RMS tower-top displacement and maintains consistent performance across different ground motions. The findings demonstrate the effectiveness and adaptability of the magnetic damper in enhancing the seismic resilience of wind turbine structures and provide a promising direction for integrating smart damping technologies into renewable energy systems.</p>