Enhancing riboflavin yield by elucidating the regulatory role of transcription factor YgzD in Bacillus subtilis
摘要
The integration of traditional strain cultivation with metabolic engineering has enabled the development and successful commercialization of high-yield riboflavin-producing Bacillus subtilis strains. Nevertheless, the mechanism through which dissolved oxygen regulates riboflavin yield in industrial fermentation remains poorly understood. In this study, transcriptome data mining identified a novel transcription factor, YgzD, whose expression is regulated by low-oxygen conditions. RT-qPCR and fusion reporter gene assays confirmed that YgzD expression is activated under low dissolved oxygen. Under low dissolved oxygen conditions, YgzD deficiency significantly upregulates the transcription level of purR, which encodes a repressor of purine metabolism. This indicates that YgzD functions to promote purR expression. Consequently, by modulating purR transcription level, YgzD indirectly regulates the synthesis of GTP, a key precursor for riboflavin biosynthesis. Concurrently, YgzD acts as a negative regulator of alsS, a key gene in central carbon metabolism. Based on these findings, a 5′UTR engineering approach was employed to fine-tune YgzD expression, leading to the identification of optimal 5′UTR-ygzD combinations. The final engineered strain, constructed by integrating a synthetic Srib operon, achieved a riboflavin titer of 11.49 g/L in a 5 L fermenter, representing a 50.39% increase in yield. Elucidating the environmental response mechanisms in engineered strains provides a critical foundation for systematically enhancing their production performance.