<p>The application of the standard quasi-steady-state approximation to the Michaelis-Menten reaction mechanism is a textbook example of biochemical model reduction, derived using singular perturbation theory. However, determining the specific biochemical conditions that dictate the validity of the standard quasi-steady-state approximation remains a challenging endeavor. Emerging research suggests that the accuracy of the standard quasi-steady-state approximation improves as the ratio of the initial enzyme concentration, <InlineEquation ID="IEq1"> <InlineMediaObject> <ImageObject Color="BlackWhite" FileRef="11538_2025_1451_Article_IEq1.gif" Format="GIF" Height="12" Rendition="HTML" Resolution="72" Type="Linedraw" Width="15" /> </InlineMediaObject> <EquationSource Format="TEX">\(e_0\)</EquationSource> <EquationSource Format="MATHML"><math> <msub> <mi>e</mi> <mn>0</mn> </msub> </math></EquationSource> </InlineEquation>, to the Michaelis constant, <InlineEquation ID="IEq2"> <InlineMediaObject> <ImageObject Color="BlackWhite" FileRef="11538_2025_1451_Article_IEq2.gif" Format="GIF" Height="16" Rendition="HTML" Resolution="72" Type="Linedraw" Width="29" /> </InlineMediaObject> <EquationSource Format="TEX">\(K_M\)</EquationSource> <EquationSource Format="MATHML"><math> <msub> <mi>K</mi> <mi>M</mi> </msub> </math></EquationSource> </InlineEquation>, decreases. In this work, we examine this ratio and its implications for the accuracy and validity of the standard quasi-steady-state approximation as compared to other quasi-steady-state reductions in its proximity. Using standard tools from the analysis of ordinary differential equations, we show that while <InlineEquation ID="IEq3"> <InlineMediaObject> <ImageObject Color="BlackWhite" FileRef="11538_2025_1451_Article_IEq3.gif" Format="GIF" Height="19" Rendition="HTML" Resolution="72" Type="Linedraw" Width="52" /> </InlineMediaObject> <EquationSource Format="TEX">\(e_0/K_M\)</EquationSource> <EquationSource Format="MATHML"><math> <mrow> <msub> <mi>e</mi> <mn>0</mn> </msub> <mo stretchy="false">/</mo> <msub> <mi>K</mi> <mi>M</mi> </msub> </mrow> </math></EquationSource> </InlineEquation> provides an indication of the standard quasi-steady-state approximation’s asymptotic accuracy, the standard quasi-steady-state approximation’s predominance relies on a small ratio of <InlineEquation ID="IEq4"> <InlineMediaObject> <ImageObject Color="BlackWhite" FileRef="11538_2025_1451_Article_IEq1.gif" Format="GIF" Height="12" Rendition="HTML" Resolution="72" Type="Linedraw" Width="15" /> </InlineMediaObject> <EquationSource Format="TEX">\(e_0\)</EquationSource> <EquationSource Format="MATHML"><math> <msub> <mi>e</mi> <mn>0</mn> </msub> </math></EquationSource> </InlineEquation> to the Van Slyke-Cullen constant, <i>K</i>. Here, we define the predominance of a quasi-steady-state reduction when it offers the highest approximation accuracy among other well-known reductions with overlapping validity conditions. We conclude that the magnitude of <InlineEquation ID="IEq5"> <InlineMediaObject> <ImageObject Color="BlackWhite" FileRef="11538_2025_1451_Article_IEq5.gif" Format="GIF" Height="19" Rendition="HTML" Resolution="72" Type="Linedraw" Width="42" /> </InlineMediaObject> <EquationSource Format="TEX">\(e_0/K\)</EquationSource> <EquationSource Format="MATHML"><math> <mrow> <msub> <mi>e</mi> <mn>0</mn> </msub> <mo stretchy="false">/</mo> <mi>K</mi> </mrow> </math></EquationSource> </InlineEquation> offers the most accurate measure of the validity of the standard quasi-steady-state approximation.</p>

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Accuracy Versus Predominance: Reassessing the Validity of the Quasi-Steady-State Approximation

  • Kashvi Srivastava,
  • Justin Eilertsen,
  • Victoria Booth,
  • Santiago Schnell

摘要

The application of the standard quasi-steady-state approximation to the Michaelis-Menten reaction mechanism is a textbook example of biochemical model reduction, derived using singular perturbation theory. However, determining the specific biochemical conditions that dictate the validity of the standard quasi-steady-state approximation remains a challenging endeavor. Emerging research suggests that the accuracy of the standard quasi-steady-state approximation improves as the ratio of the initial enzyme concentration, \(e_0\) e 0 , to the Michaelis constant, \(K_M\) K M , decreases. In this work, we examine this ratio and its implications for the accuracy and validity of the standard quasi-steady-state approximation as compared to other quasi-steady-state reductions in its proximity. Using standard tools from the analysis of ordinary differential equations, we show that while \(e_0/K_M\) e 0 / K M provides an indication of the standard quasi-steady-state approximation’s asymptotic accuracy, the standard quasi-steady-state approximation’s predominance relies on a small ratio of \(e_0\) e 0 to the Van Slyke-Cullen constant, K. Here, we define the predominance of a quasi-steady-state reduction when it offers the highest approximation accuracy among other well-known reductions with overlapping validity conditions. We conclude that the magnitude of \(e_0/K\) e 0 / K offers the most accurate measure of the validity of the standard quasi-steady-state approximation.