<p>Drug-target occupancy time–the cumulative duration a target remains bound–critically influences therapeutic efficacy. While Copeland’s widely-used residence time (<InlineEquation ID="IEq3"> <EquationSource Format="TEX">\(1/k_\textrm{off}\)</EquationSource> </InlineEquation>) emphasizes dissociation kinetics, it neglects association rates, rebinding events, and drug elimination that affect in vivo outcomes. Returning to Paul Ehrlich’s 1913 principle that drugs act only when bound (“Corpora non agunt nisi fixata”), we develop a mathematically rigorous framework defining Ehrlich occupancy time, EOT, as the integral of fractional target occupancy over time. Our approach explicitly incorporates association (<InlineEquation ID="IEq4"> <EquationSource Format="TEX">\(k_\textrm{on}\)</EquationSource> </InlineEquation>) and dissociation (<InlineEquation ID="IEq5"> <EquationSource Format="TEX">\(k_\textrm{off}\)</EquationSource> </InlineEquation>) kinetics, accounts for rebinding, and extends to systems with drug removal. For drug-receptor closed systems at equilibrium, we prove that relative EOT equals the equilibrium occupancy fraction; under ligand-excess conditions this reduces to <InlineEquation ID="IEq6"> <EquationSource Format="TEX">\(b_0/(K_d + b_0)\)</EquationSource> </InlineEquation>, where <InlineEquation ID="IEq7"> <EquationSource Format="TEX">\(K_d\)</EquationSource> </InlineEquation> is the dissociation constant and <InlineEquation ID="IEq8"> <EquationSource Format="TEX">\(b_0\)</EquationSource> </InlineEquation> the drug concentration. For induced-fit mechanisms, conformational changes reduce the effective dissociation constant to <InlineEquation ID="IEq9"> <EquationSource Format="TEX">\(K_d^* = K_d/(1 + k_3/k_4)\)</EquationSource> </InlineEquation> (where <InlineEquation ID="IEq10"> <EquationSource Format="TEX">\(k_3\)</EquationSource> </InlineEquation> and <InlineEquation ID="IEq11"> <EquationSource Format="TEX">\(k_4\)</EquationSource> </InlineEquation> are forward and reverse isomerization rates), prolonging occupancy through kinetic trapping. Critically, for drug-receptor systems with first-order drug elimination at rate <InlineEquation ID="IEq12"> <EquationSource Format="TEX">\(k_3\)</EquationSource> </InlineEquation>, we derive rigorous bounds: <InlineEquation ID="IEq13"> <EquationSource Format="TEX">\(b_0/[(b_0 + K_d)k_3] \le \textrm{EOT}_{\infty } \le b_0/(K_d \cdot k_3)\)</EquationSource> </InlineEquation>, where <InlineEquation ID="IEq14"> <EquationSource Format="TEX">\(\textrm{EOT}_{\infty }:= \lim _{T\rightarrow \infty }\textrm{EOT}(T)\)</EquationSource> </InlineEquation> is the total cumulative occupancy time as <InlineEquation ID="IEq15"> <EquationSource Format="TEX">\(T\rightarrow \infty \)</EquationSource> </InlineEquation>, revealing that both binding affinity and elimination rate jointly determine occupancy. This explains why high-affinity drugs can fail clinically if eliminated rapidly, and identifies pharmacokinetic optimization opportunities. We prove Copeland’s definition is a special case of Ehrlich occupancy time when rebinding is absent. Our framework provides quantitative tools for optimizing drug design beyond binding affinity and enables improved prediction of in vivo efficacy where pharmacokinetics dominate.</p>

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Ehrlich occupancy time: beyond \(k_\textrm{off}\) to a complete residence time framework

  • Justin Eilertsen,
  • Santiago Schnell,
  • Sebastian Walcher

摘要

Drug-target occupancy time–the cumulative duration a target remains bound–critically influences therapeutic efficacy. While Copeland’s widely-used residence time ( \(1/k_\textrm{off}\) ) emphasizes dissociation kinetics, it neglects association rates, rebinding events, and drug elimination that affect in vivo outcomes. Returning to Paul Ehrlich’s 1913 principle that drugs act only when bound (“Corpora non agunt nisi fixata”), we develop a mathematically rigorous framework defining Ehrlich occupancy time, EOT, as the integral of fractional target occupancy over time. Our approach explicitly incorporates association ( \(k_\textrm{on}\) ) and dissociation ( \(k_\textrm{off}\) ) kinetics, accounts for rebinding, and extends to systems with drug removal. For drug-receptor closed systems at equilibrium, we prove that relative EOT equals the equilibrium occupancy fraction; under ligand-excess conditions this reduces to \(b_0/(K_d + b_0)\) , where \(K_d\) is the dissociation constant and \(b_0\) the drug concentration. For induced-fit mechanisms, conformational changes reduce the effective dissociation constant to \(K_d^* = K_d/(1 + k_3/k_4)\) (where \(k_3\) and \(k_4\) are forward and reverse isomerization rates), prolonging occupancy through kinetic trapping. Critically, for drug-receptor systems with first-order drug elimination at rate \(k_3\) , we derive rigorous bounds: \(b_0/[(b_0 + K_d)k_3] \le \textrm{EOT}_{\infty } \le b_0/(K_d \cdot k_3)\) , where \(\textrm{EOT}_{\infty }:= \lim _{T\rightarrow \infty }\textrm{EOT}(T)\) is the total cumulative occupancy time as \(T\rightarrow \infty \) , revealing that both binding affinity and elimination rate jointly determine occupancy. This explains why high-affinity drugs can fail clinically if eliminated rapidly, and identifies pharmacokinetic optimization opportunities. We prove Copeland’s definition is a special case of Ehrlich occupancy time when rebinding is absent. Our framework provides quantitative tools for optimizing drug design beyond binding affinity and enables improved prediction of in vivo efficacy where pharmacokinetics dominate.