<p>Polycyclic aromatic hydrocarbons (PAHs) often occur in mixtures, creating complex interactions in humans and other organisms exposed through food. However, the effects of these PAH mixtures at environmentally relevant low concentrations (ERC) on the metabolome have been underexplored. This research investigated the ERC of PAHs in Vembanad estuary biota and examined the impact of chronic exposure to these mixtures using an untargeted metabolomics approach. The study observed that 64% of the aquatic samples analysed from India's Ramsar site (VE) had been detected with one or more PAHs (ΣPAHs5.12–1015.28&#xa0;ng/g). The non-carcinogenic risk from dietary PAH exposure was low, but cancer risk analysis showed a moderate to high risk for specific areas, particularly Perumbalam. Furthermore, the untargeted metabolomics study revealed that chronic exposure to a PAH mixture at ERC dysregulated metabolites from major classes, including phosphatidylcholines, amino acids, fatty acyls, bile acids, nucleotides, purines, pyrimidines, and vitamins. These metabolites are predominantly associated with key metabolic pathways, including mitochondrial electron transport, pyrimidine metabolism, the citric acid cycle, and butyrate metabolism, all of which play critical roles in cellular energy production, biosynthesis, and regulation. Pathway analysis revealed that long-term exposure to PAH mixtures, even at low doses, significantly affects phenylalanine, tyrosine, and tryptophan metabolism, increasing the likelihood of metabolic and endocrine disorders.</p>