<p>Desmids are valuable bioindicators in peatland ecosystems due to their sensitivity to environmental changes. In temperate and boreal wetlands, seasonal desiccation of aquatic habitats, which is increasing in frequency and severity due to ongoing climate change, is currently considered a key factor structuring the distribution of individual taxa. In this study, the desiccation tolerance of <i>Micrasterias thomasiana</i> and <i>Staurastrum hirsutum</i> isolated from contrasting hydrological environments in the peatland habitats of the Ore Mountains, Czech Republic, is investigated. Using controlled experimental conditions, we subjected both young, actively growing and old, mature cultures to four different desiccation treatments and evaluated morphology and photosynthetic performance. Our results showed that young and old cultures of both species exhibited a very similar photophysiological response. Severe desiccation led to an irreversible decline in the effective quantum yield of photosystem II in both species, resulting in cell death. Mild drought stress allowed the cultures to recover, indicating that the stress severity determines the recovery potential. Finally, prolonged desiccation resulted in irreversible damage in older cultures of both species, emphasizing the limited desiccation resilience of desmids. We observed similarities in morphology with <i>Zygnema</i> “pre-akinetes,” but in contrast to these resilient cells, the old cells of <i>M. thomasiana</i> and <i>S. hirsutum</i> did not survive the harsher desiccation conditions. Long-term mild desiccation revealed a higher resistance of <i>S. hirsutum</i>, probably due to the protective role of its dense mucilage. In nature, these two species usually inhabit localities with low desiccation risk or avoid and mitigate desiccation stress through localized survival strategies.</p>