Scholarlink

Key message <p><b>The </b><Emphasis Type="BoldItalic">phyB</Emphasis><b> mutant exhibits robust salt tolerance via enhanced K⁺/Na⁺ homeostasis, proline accumulation, and membrane stability. Transcriptomics reveals PHYB coordinates a unique early-response network involving transcription factors, kinesins, and DNA metabolism. Integrated population eQTL analysis and transcriptional regulation prediction condense a core salt-tolerance module of four transcription factors, three kinesins, and six DNA metabolism genes. This study identifies actionable targets for genetic improvement of salt-tolerant varieties.</b> </p> Abstract <p>Soil salinization poses a significant threat to global rice production, underscoring the urgent need to improve salt tolerance as a key strategy for ensuring food security. In this study, we report that the phytochrome B (phyB) mutant exhibits robust salt tolerance via enhanced K⁺/Na⁺ homeostasis, proline accumulation, and membrane stability. Transcriptomic profiling revealed that phyB modulates salt adaptation via transcription factor activity, DNA metabolism, and motor activity. Utilizing the salt-responsive expression quantitative trait loci (eQTL) data from global mini-core rice collection comprising 202 accessions, we systematically screened enriched Gene Ontology (GO) terms and predicted a set of core salt tolerance-related genes at genomic level in the phyB mutant. Transcriptional regulation analysis established a regulatory network in which four transcription factors potentially regulate three kinesin genes and six DNA metabolism-related genes. Luciferase (LUC) assays further confirmed that these transcription factors directly activate the promoters of downstream genes. Heterologous expression in yeast demonstrated that a representative transcription factor (Os10g0371100), a kinesin (Os05g0397900), and a DNA metabolism-related gene (Os01g0944900) significantly promoted yeast growth under salt stress conditions, indicating conserved functions. Collectively, these findings elucidate a novel molecular network through which PHYB deficiency enhances salt tolerance by integrating transcription factor activity, DNA metabolism, and motor activity, and provide a set of core candidate genes for the genetic improvement of salt tolerance in rice.</p>

错误：搜索内容不能为空，请输入英文关键词
错误：关键词超出字数限制，请精简
高级检索

Transcriptome and eQTL analysis reveal the novel molecular mechanism underlying salt tolerance in the phytochrome B mutant

  • 期刊论文

  • 发表日期：

    2026年5月20日

查看全文
  • Conghui Jiang,
  • Yanan He,
  • Lixia Xie,
  • Wen Li,
  • Yaping Li,
  • Yongbin Peng,
  • Jinjun Zhou,
  • Guanhua Zhou,
  • Shasha Wang,
  • Chongke Zheng,
  • Xianzhi Xie

摘要

Key message

The phyB mutant exhibits robust salt tolerance via enhanced K⁺/Na⁺ homeostasis, proline accumulation, and membrane stability. Transcriptomics reveals PHYB coordinates a unique early-response network involving transcription factors, kinesins, and DNA metabolism. Integrated population eQTL analysis and transcriptional regulation prediction condense a core salt-tolerance module of four transcription factors, three kinesins, and six DNA metabolism genes. This study identifies actionable targets for genetic improvement of salt-tolerant varieties.

Abstract

Soil salinization poses a significant threat to global rice production, underscoring the urgent need to improve salt tolerance as a key strategy for ensuring food security. In this study, we report that the phytochrome B (phyB) mutant exhibits robust salt tolerance via enhanced K⁺/Na⁺ homeostasis, proline accumulation, and membrane stability. Transcriptomic profiling revealed that phyB modulates salt adaptation via transcription factor activity, DNA metabolism, and motor activity. Utilizing the salt-responsive expression quantitative trait loci (eQTL) data from global mini-core rice collection comprising 202 accessions, we systematically screened enriched Gene Ontology (GO) terms and predicted a set of core salt tolerance-related genes at genomic level in the phyB mutant. Transcriptional regulation analysis established a regulatory network in which four transcription factors potentially regulate three kinesin genes and six DNA metabolism-related genes. Luciferase (LUC) assays further confirmed that these transcription factors directly activate the promoters of downstream genes. Heterologous expression in yeast demonstrated that a representative transcription factor (Os10g0371100), a kinesin (Os05g0397900), and a DNA metabolism-related gene (Os01g0944900) significantly promoted yeast growth under salt stress conditions, indicating conserved functions. Collectively, these findings elucidate a novel molecular network through which PHYB deficiency enhances salt tolerance by integrating transcription factor activity, DNA metabolism, and motor activity, and provide a set of core candidate genes for the genetic improvement of salt tolerance in rice.