We investigate the stability and large-time behavior of solutions to the three-dimensional incompressible Navier–Stokes equations with horizontal fractional dissipation of order \(\alpha \in (0,1]\) near a constant background state \(v^{(0)} = A\) . For sufficiently small initial perturbations in \(H^3(\mathbb {R}^3)\) , we establish global existence and uniform bounds for the solutions. Moreover, for a suitable range of parameters \(\alpha \) and \(\sigma \) , we prove that these solutions exhibit optimal time-decay rates, with the third component decaying faster than the horizontal components, reflecting an enhanced dissipation phenomenon. The proofs rely on a combination of anisotropic inequalities, energy estimates, and integral representations associated with the fractional horizontal heat semigroup. These results extend classical well-posedness and decay theory for the Navier–Stokes equations to the setting of partial dissipation and provide a framework for studying related geophysical and anisotropic fluid models.